{"id":24,"date":"2024-02-05T20:40:09","date_gmt":"2024-02-05T20:40:09","guid":{"rendered":"https:\/\/macblog.mcmaster.ca\/reel-digger\/?p=24"},"modified":"2024-02-05T20:40:10","modified_gmt":"2024-02-05T20:40:10","slug":"acinetobacter-to-yersina-nothing-really-starts-with-z","status":"publish","type":"post","link":"https:\/\/macblog.mcmaster.ca\/reel-digger\/2024\/02\/05\/acinetobacter-to-yersina-nothing-really-starts-with-z\/","title":{"rendered":"Acinetobacter to Yersina (Nothing Really Starts with “Z”)"},"content":{"rendered":"\n

Outlining the Role of Bacteria in Humans, and Archaeology<\/strong><\/p>\n\n\n\n

Today’s music playlist is co-authored by me (Vangelis, theme from Blade Runner<\/a>) and the YouTube AI. Presumably, the AI knows me well enough to suggest music based on my own previous choices. I can’t dispute that it’s the type of music that I would listen to on my own (its moved onto The Stones, Gimmee Shelter<\/a>); however, the playlist does reflect some unusual directions in taste. I have always had eclectic interests, and they have continued to diverge from the norm as I’ve gotten older. And I reach the same conclusion when I consider my approach to writing a research paper.<\/p>\n\n\n\n

My first, and greatest challenge, is aligning my interests, and perspectives, with academic expectations (profs, other students). <\/p>\n\n\n\n

\"\"<\/figure>\n\n\n\n

For the upcoming paper, I plan to focus on bacteria. Normally the subject itself would be sufficient to characterize my work as “bio-anthropology”; instead, I’m looking at bacteria as artifacts. I want to put an archaeology spin on the subject. Humanity evolved with bacteria, and we owe our complexity and lives to bacteria. Most cells in our bodies have mitochondria, organelles responsible for providing the energy used by our bodies. These cells are unique, and possess their own DNA. It is likely that millions of years ago, these were invading bacteria in prokaryotic cells, and we have continued to evolve with this unique and necessary bacterial infection. In perhaps a limited sense, we continue to carry an artifact of an ancient bacterial infection within us (ironically, YouTube is playing Modern English for me: “I’ll stop the world and melt with you”<\/a>). <\/p>\n\n\n\n

Bacteria are most frequently seen as agents playing a role in disease. Anthropologists look at a bone, and describe pathology – the abnormality; from this, they infer a role for bacteria or other microorganisms. It’s a simple and well established relationship; however, like many relationships, it ignores the complexities that add colour and depth to the relationship. I want to move beyond diseases, and focus on other aspects of the relationship.<\/p>\n\n\n\n

Bacteria can provide new insights into human activity. Analysis of microbial communities can provide information on the presence of a particular site or site type (Rostami-Charati et al., 2022<\/a>); possible dates of a site (Mura et al., 2021<\/a>), food consumption (eg Margesin et al., 2017<\/a>; Kashirskaya et al., 2023<\/a>), and may serve as a marker for migrations and trade relationships. Bacteria also play a role in archaeology as agents of destruction; for example, in the destruction of engineering material in the marine environment (e.g. Jurgens et al., 2005<\/a>). An initial investigation suggests that there is enough material to provide a review of the subject that goes beyond the typical assessment of the bacterial process in human disease.<\/p>\n\n\n\n

The due date assigned for this paper is 15 April; therefore, I have to create a timetable that will support my writing process:<\/p>\n\n\n\n

05 February – draft my internal outline to guide research, collection of notes, provide internal direction<\/p>\n\n\n\n

05 February to 01 March – literature review<\/p>\n\n\n\n

01 March – 08 March – write initial draft<\/p>\n\n\n\n

08 March – submit initial draft for external review to fellow cohort members, microbiologist<\/p>\n\n\n\n

19 March – review of initial draft of paper in class<\/p>\n\n\n\n

30 March – final date for external review (gives reviewers approximately 3 weeks)<\/p>\n\n\n\n

05 April – complete revised draft based on external comments and personal review<\/p>\n\n\n\n

At this point, I will send out the draft for my “mother review” – Mom is an intelligent and cranky lady. She has a passing interest in archaeology, and loves microbiology (as much as a mother can). She will read the paper, and she is completely merciless if I try to slip in something that does not make sense. I will also resubmit the paper to previous reviewers as well … but none of these will produce a “mother-proof” paper!<\/p>\n\n\n\n

12 April – Final review of the paper<\/p>\n\n\n\n

15 April – Formal submission of the paper to the class<\/p>\n\n\n\n

When laid out in cleanly-defined chronological order, it almost seems natural, clear and easy to understand and complete. What lies beneath the surface is the ADHD paradox: I need structure and organization to achieve an objective, yet my personality denies and refuses to be organized, or to accept the external imposition of order! <\/p>\n\n\n\n

For that reason, I will not commit to a writing log. I fully agree that what is managed must be measured; I understand how it sheds light on the process; I wish that I was the person who could follow a consistent process. However, I know from experience that I will start by logging my writing, and then I will be writing to conform to the log, and then -detesting the process that is overriding the creation- I will stop both writing and logging. So, my process will progress according to swathes of time interrupted by milestone dates!<\/p>\n\n\n\n

(Finishing with Dexys Midnight Runners, Show Me<\/a>).<\/p>\n","protected":false},"excerpt":{"rendered":"

Outlining the Role of Bacteria in Humans, and Archaeology Today’s music playlist is co-authored by me (Vangelis, theme from Blade<\/p>\n","protected":false},"author":376,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":"","_links_to":"","_links_to_target":""},"categories":[6],"tags":[15,13,14],"class_list":["post-24","post","type-post","status-publish","format-standard","hentry","category-personal","tag-anthrop-703","tag-bacteria","tag-process"],"yoast_head":"\nAcinetobacter to Yersina (Nothing Really Starts with "Z") - The Reel Digger<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/macblog.mcmaster.ca\/reel-digger\/2024\/02\/05\/acinetobacter-to-yersina-nothing-really-starts-with-z\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Acinetobacter to Yersina (Nothing Really Starts with "Z") - 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